%0 Journal Article %T Metagenomics Versus Metatranscriptomics of the Murine Gut Microbiome for Assessing Microbial Metabolism During Inflammation %+ University of Alberta %+ Université de Pau et des Pays de l'Adour (UPPA) %+ Institut des sciences analytiques et de physico-chimie pour l'environnement et les materiaux (IPREM) %A Jovel, Juan %A Nimaga, Aissata %A Jordan, Tracy %A O’keefe, Sandra %A Patterson, Jordan %A Thiesen, Aducio %A Hotte, Naomi %A Bording-Jorgensen, Michael %A Subedi, Sudip %A Hamilton, Jessica %A Carpenter, Eric, J %A Lauga, Béatrice %A Elahi, Shokrollah %A Madsen, Karen, L %A Wong, Gane Ka-Shu %A Mason, Andrew, L %< avec comité de lecture %@ 1664-302X %J Frontiers in Microbiology %I Frontiers Media %V 13 %8 2022-02-03 %D 2022 %R 10.3389/fmicb.2022.829378 %K This article was submitted to Evolutionary and Genomic Microbiology %K a section of the journal Frontiers in Microbiology microbiome %K gut inflammation %K shotgun metagenomics %K metatranscriptomics %K bacterial metabolic pathways %Z Life Sciences [q-bio]/Animal biology/Veterinary medicine and animal HealthJournal articles %X Shotgun Metagenomics Versus Metatranscriptomics profile bacterial population composition and taxa relative abundance, but did not inform about differential gene content associated with inflammation. Metatranscriptomics was more robust for capturing bacterial metabolism in real time. Although both approaches are complementary, it is often not possible to apply them in parallel. We hope our data will help researchers to decide which approach is more appropriate for the study of different aspects of the microbiome. %G English %2 https://univ-pau.hal.science/hal-03571948/document %2 https://univ-pau.hal.science/hal-03571948/file/Jovel%20J%20Frontiers%20in%20Microbiology%202022%20Metagenomics%20Versus%20Metatranscriptomics%20of%20the%20Murine%20Gut%20Microbiome%20for%20Assessing%20Microbial%20Metabolism%20During%20Inflammation.pdf %L hal-03571948 %U https://univ-pau.hal.science/hal-03571948 %~ CNRS %~ UNIV-PAU %~ IPREM %~ INC-CNRS %~ IPREM-CME %~ UPPA-OA %~ TEST2-HALCNRS